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  • Currently displaying 41 - 60 of 582 publications
Author(s)
Publication title
Journal Name
Publication year
Transferable machine learning interatomic potential for bond dissociation energy prediction of drug-like molecule
E Gelžinytė, M Öeren, MD Segall, G Csányi
(2023)
wfl Python Toolkit for Creating Machine Learning Interatomic Potentials and Related Atomistic Simulation Workflows
E Gelžinytė, S Wengert, TK Stenczel, HH Heenen, K Reuter, G Csányi, N Bernstein
(2023)
Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data
S Seal, H Yang, M-A Trapotsi, S Singh, J Carreras-Puigvert, O Spjuth, A Bender
Journal of Cheminformatics
(2023)
15
Explaining Blood–Brain Barrier Permeability of Small Molecules by Integrated Analysis of Different Transport Mechanisms
FMG Cornelissen, G Markert, G Deutsch, M Antonara, N Faaij, I Bartelink, D Noske, WP Vandertop, A Bender, BA Westerman
J Med Chem
(2023)
66
Prediction of Compound Plasma Concentration–Time Profiles in Mice Using Random Forest
K Handa, P Wright, S Yoshimura, M Kageyama, T Iijima, A Bender
Molecular pharmaceutics
(2023)
20
Benchmarking causal reasoning algorithms for gene expression-based compound mechanism of action analysis.
A Bender
BMC Bioinformatics
(2023)
24
Deep generative models for 3D molecular structure
B Baillif, J Cole, P McCabe, A Bender
Current opinion in structural biology
(2023)
80
Using Transcriptomics and Cell Morphology Data in Drug Discovery: The Long Road to Practice
L-L Pruteanu, A Bender
ACS medicinal chemistry letters
(2023)
14
Mechanism of action deconvolution of the small-molecule pathological tau aggregation inhibitor Anle138b.
L Hosseini-Gerami, E Ficulle, N Humphryes-Kirilov, DC Airey, J Scherschel, S Kananathan, BJ Eastwood, S Bose, DA Collier, E Laing, D Evans, H Broughton, A Bender
Alzheimer's research & therapy
(2023)
15
Mechanism of action deconvolution of the small-molecule pathological tau aggregation inhibitor Anle138b
L Hosseini-Gerami, E Ficulle, N Humphryes-Kirilov, DC Airey, J Scherschel, S Kananathan, BJ Eastwood, S Bose, DA Collier, E Laing, D Evans, H Broughton, A Bender
Alzheimer's Research & Therapy
(2023)
15
Integrating structure-based approaches in generative molecular design.
M Thomas, A Bender, C de Graaf
Curr Opin Struct Biol
(2023)
79
Analysis of Virtual Control Groups and Inter-species Concordance using Preclinical Toxicity Data
P Wright
(2023)
In silico Prediction and Biological Assessment of Novel Angiogenesis Modulators from Traditional Chinese Medicine
Y Zhu, H Yang, L Han, LH Mervin, L Hosseini-Gerami, P Li, P Wright, M-A Trapotsi, K Liu, T-P Fan, A Bender
Front Pharmacol
(2023)
14
Using chemical and biological data to predict drug toxicity
A Liu, S Seal, H Yang, A Bender
SLAS Discov
(2023)
28
Using Transcriptomics and Cell Morphology Data in Drug Discovery: The Long Road to Practice
L-L Pruteanu, A Bender
ACS MEDICINAL CHEMISTRY LETTERS
(2023)
Prediction of inotropic effect based on calcium transients in human iPSC-derived cardiomyocytes and machine learning
H Yang, O Obrezanova, A Pointon, W Stebbeds, J Francis, KA Beattie, P Clements, JS Harvey, GF Smith, A Bender
Toxicol Appl Pharmacol
(2022)
459
Statistical analysis of preclinical inter-species concordance of histopathological findings in the eTOX database
PSR Wright, KA Briggs, R Thomas, GF Smith, G Maglennon, P Mikulskis, M Chapman, N Greene, BU Phillips, A Bender
Regul Toxicol Pharmacol
(2022)
138
Retrospective analysis of the potential use of virtual control groups in preclinical toxicity assessment using the eTOX database.
PSR Wright, GF Smith, KA Briggs, R Thomas, G Maglennon, P Mikulskis, M Chapman, N Greene, BU Phillips, A Bender
Regulatory Toxicology and Pharmacology
(2022)
138
Augmented Hill-Climb increases reinforcement learning efficiency for language-based de novo molecule generation.
M Thomas, NM O'Boyle, A Bender, C de Graaf
Journal of Cheminformatics
(2022)
14
A review of biomedical datasets relating to drug discovery: a knowledge graph perspective
S Bonner, IP Barrett, C Ye, R Swiers, O Engkvist, A Bender, CT Hoyt, WL Hamilton
Briefings in bioinformatics
(2022)
23