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  • Currently displaying 461 - 480 of 556 publications
Author(s)
Publication title
Journal Name
Publication year
Collaboration-based function prediction in protein-protein interaction networks
H Rahmani, H Blockeel, A Bender
Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics
(2011)
7014 LNCS
Computational Approaches in Cheminformatics and Bioinformatics
R Guha, A Bender
Computational Approaches in Cheminformatics and Bioinformatics
(2011)
Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information
I Sushko, S Novotarskyi, R Körner, AK Pandey, M Rupp, W Teetz, S Brandmaier, A Abdelaziz, VV Prokopenko, VY Tanchuk, R Todeschini, A Varnek, G Marcou, P Ertl, V Potemkin, M Grishina, J Gasteiger, C Schwab, II Baskin, VA Palyulin, EV Radchenko, WJ Welsh, V Kholodovych, D Chekmarev, A Cherkasov, J Aires-de-Sousa, Q-Y Zhang, A Bender, F Nigsch, L Patiny, A Williams, V Tkachenko, IV Tetko
Journal of Computer-Aided Molecular Design
(2011)
Combining Aggregation with Pareto Optimization: A Case Study in Evolutionary Molecular Design
JW Kruisselbrink, MTM Emmerich, T Bäck, A Bender, AP IJzerman, E van der Horst
Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics
(2010)
5467 LNCS
Virtual Activity Profiling of Bioactive Molecules by 1D Fingerprinting
A Sebastian, A Bender, V Ramakrishnan
Molecular Informatics
(2010)
29
How similar are those molecules after all? Use two descriptors and you will have three different answers
A Bender
Expert Opinion on Drug Discovery
(2010)
5
Bayesian methods in virtual screening and chemical biology.
A Bender
Methods in Molecular Biology
(2010)
672
Nonsubjective clustering scheme for multiconformer databases
AB Yongye, A Bender, K Martinez-Mayorga
ABSTR PAP AM CHEM S
(2010)
240
Scaffold diversity analysis using scaffold retrieval curves and an entropy-based measure
JL Medina-Franco, K Martinez-Mayorga, A Bender, T Scior
ABSTR PAP AM CHEM S
(2010)
240
A novel chemogenomics analysis of G protein-coupled receptors (GPCRs) and their ligands: A potential strategy for receptor de-orphanization
E van der Horst, JE Peironcely, AP Ijzerman, MW Beukers, JR Lane, HWT van Vlijmen, MTM Emmerich, Y Okuno, A Bender
BMC Bioinformatics
(2010)
11
Dynamic clustering threshold reduces conformer ensemble size while maintaining a biologically relevant ensemble.
AB Yongye, A Bender, K Martínez-Mayorga
Journal of computer-aided molecular design
(2010)
24
Prospective validation of a comprehensive in silico hERG model and its applications to commercial compound and drug databases.
MR Doddareddy, EC Klaasse, Shagufta, AP Ijzerman, A Bender
Chemmedchem
(2010)
5
Mining protein dynamics from sets of crystal structures using “consensus structures”
GJP van Westen, JK Wegner, A Bender, AP Ijzerman, HWT van Vlijmen
Protein Sci
(2010)
19
Metabolite identification pipeline based on MS fragmentation
M Rojas-Cherto, JE Peironcely, PT Kasper, A Bender, J-L Faulon, T Reijmers, L Coulier, R Vreeken, T Hankemeier
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2010)
239
Preface
J-L Faulon, A Bender
(2010)
Databases: Compound bioactivities go public
A Bender
Nature Chemical Biology
(2010)
6
Handbook of Chemoinformatics Algorithms
J-L Faulon, A Bender
(2010)
Predicting the functions of proteins in Protein-Protein Interaction networks from global information
H Rahmani, H Blockeel, A Bender
PROCEEDINGS OF THE THIRD INTERNATIONAL WORKSHOP ON MACHINE LEARNING IN SYSTEMS BIOLOGY
(2010)
8
Scaffold Diversity Analysis of Compound Daft Sets Using an Entropy-Based Measure
JL Medina‐Franco, K Martínez‐Mayorga, A Bender, T Scior
QSAR and Combinatorial Science
(2009)
28
Alpha shapes applied to molecular shape characterization exhibit novel properties compared to established shape descriptors.
JA Wilson, A Bender, T Kaya, PA Clemons
J Chem Inf Model
(2009)
49