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  • Currently displaying 341 - 360 of 574 publications
Author(s)
Publication title
Journal Name
Publication year
Chemically Aware Model Builder (camb): an R package for property and bioactivity modelling of small molecules.
DS Murrell, I Cortes-Ciriano, GJP van Westen, IP Stott, A Bender, TE Malliavin, RC Glen
Journal of Cheminformatics
(2015)
7
Virtual Screening for Transition State Analogue Inhibitors of IRAP Based on Quantum Mechanically Derived Reaction Coordinates
F Svensson, K Engen, T Lundbäck, M Larhed, C Sköld
Journal of Chemical Information and Modeling
(2015)
55
Synthesis of 1,2-benzisoxazole tethered 1,2,3-triazoles that exhibit anticancer activity in acute myeloid leukemia cell lines by inhibiting histone deacetylases, and inducing p21 and tubulin acetylation
N Ashwini, M Garg, CD Mohan, JE Fuchs, S Rangappa, S Anusha, TR Swaroop, KS Rakesh, D Kanojia, V Madan, A Bender, HP Koeffler, Basappa, KS Rangappa
Bioorg Med Chem
(2015)
23
Synergy Maps: exploring compound combinations using network-based visualization
R Lewis, R Guha, T Korcsmaros, A Bender
Journal of Cheminformatics
(2015)
7
Screening of quinoline, 1,3-benzoxazine, and 1,3-oxazine-based small molecules against isolated methionyl-tRNA synthetase and A549 and HCT116 cancer cells including an in silico binding mode analysis
H Bharathkumar, CD Mohan, S Rangappa, T Kang, HK Keerthy, JE Fuchs, NH Kwon, A Bender, S Kim, Basappa, KS Rangappa
Organic & Biomolecular Chemistry
(2015)
13
Using a human disease network for augmenting prior knowledge about diseases
H Rahmani, H Blockeel, A Bender
Intelligent Data Analysis
(2015)
19
Metrabase: a cheminformatics and bioinformatics database for small molecule transporter data analysis and (Q)SAR modeling.
L Mak, D Marcus, A Howlett, G Yarova, G Duchateau, W Klaffke, A Bender, RC Glen
Journal of cheminformatics
(2015)
7
Comparing the Influence of Simulated Experimental Errors on 12 Machine Learning Algorithms in Bioactivity Modeling Using 12 Diverse Data Sets.
I Cortes-Ciriano, A Bender, TE Malliavin
J Chem Inf Model
(2015)
55
Synthesis and characterization of novel oxazines and demonstration that they specifically target cyclooxygenase 2
V Srinivas, CD Mohan, CP Baburajeev, S Rangappa, S Jagadish, JE Fuchs, AY Sukhorukov, Chandra, DJ Mason, KS Sharath Kumar, M Madegowda, A Bender, Basappa, KS Rangappa
Bioorganic and Medicinal Chemistry Letters
(2015)
25
Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information.
I Cortes-Ciriano, G Bouvier, M Nilges, L Maragliano, TE Malliavin
Journal of Chemical Theory and Computation
(2015)
11
Prediction of PARP Inhibition with Proteochemometric Modelling and Conformal Prediction
I Cortés-Ciriano, A Bender, T Malliavin
Molecular Informatics
(2015)
34
A multi-label approach to target prediction taking ligand promiscuity into account
AM Afzal, HY Mussa, RE Turner, A Bender, RC Glen
J Cheminform
(2015)
7
Synthesis and characterization of novel oxazines and demonstration that they specifically target cyclooxygenase 2.
V Srinivas, CD Mohan, CP Baburajeev, S Rangappa, S Jagadish, JE Fuchs, AY Sukhorukov, Chandra, DJ Mason, KS Sharath Kumar, M Madegowda, A Bender, Basappa, KS Rangappa
Bioorg Med Chem Lett
(2015)
25
Targets of drugs are generally, and targets of drugs having side effects are specifically good spreaders of human interactome perturbations.
ÁR Perez-Lopez, KZ Szalay, D Türei, D Módos, K Lenti, T Korcsmáros, P Csermely
Scientific Reports
(2015)
5
Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project
B Verbist, G Klambauer, L Vervoort, W Talloen, Z Shkedy, O Thas, A Bender, HWH Göhlmann, S Hochreiter
Drug Discovery Today
(2015)
20
Proteochemometric modelling coupled to in silico target prediction: an integrated approach for the simultaneous prediction of polypharmacology and binding affinity/potency of small molecules
S Paricharak, I Cortés-Ciriano, AP IJzerman, TE Malliavin, A Bender
Journal of cheminformatics
(2015)
7
Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis
E Harigua-Souiai, I Cortes-Ciriano, N Desdouits, TE Malliavin, I Guizani, M Nilges, A Blondel, G Bouvier
BMC Bioinformatics
(2015)
16
Prediction of PARP Inhibition with Proteochemometric Modelling and Conformal Prediction.
I Cortés-Ciriano, A Bender, T Malliavin
Molecular informatics
(2015)
34
Cheminformatics research at the unilever centre for molecular science informatics cambridge
JE Fuchs, A Bender, RC Glen
Mol Inform
(2015)
34
Applications of proteochemometrics - from species extrapolation to cell line sensitivity modelling
I Cortes-Ciriano, GJP van Westen, DS Murrell, EB Lenselink, A Bender, TE Malliavin
BMC Bioinformatics
(2015)
16