Research Fellow

Publications

Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information
I Cortes-Ciriano, G Bouvier, M Nilges, L Maragliano, TE Malliavin
J Chem Theory Comput
(2015)
11
Prediction of PARP Inhibition with Proteochemometric Modelling and Conformal Prediction
I Cortés-Ciriano, A Bender, T Malliavin
Molecular Informatics
(2015)
34
Proteochemometric modelling coupled to in silico target prediction: an integrated approach for the simultaneous prediction of polypharmacology and binding affinity/potency of small molecules.
S Paricharak, I Cortés-Ciriano, AP IJzerman, TE Malliavin, A Bender
J Cheminform
(2015)
7
Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis.
E Harigua-Souiai, I Cortes-Ciriano, N Desdouits, TE Malliavin, I Guizani, M Nilges, A Blondel, G Bouvier
BMC Bioinformatics
(2015)
16
Applications of proteochemometrics - from species extrapolation to cell line sensitivity modelling
I Cortes-Ciriano, GJ van Westen, DS Murrell, EB Lenselink, A Bender, TE Malliavin
BMC bioinformatics
(2015)
16
Prediction of the potency of mammalian cyclooxygenase inhibitors with ensemble proteochemometric modeling.
I Cortes-Ciriano, DS Murrell, GJ van Westen, A Bender, TE Malliavin
Journal of cheminformatics
(2015)
7
Polypharmacology modelling using proteochemometrics (PCM): recent methodological developments, applications to target families, and future prospects
I Cortés-Ciriano, QU Ain, V Subramanian, EB Lenselink, O Méndez-Lucio, AP IJzerman, G Wohlfahrt, P Prusis, TE Malliavin, GJP van Westen, A Bender
Medchemcomm
(2015)
6
Extending in silico mechanism-of-action analysis by annotating targets with pathways: application to cellular cytotoxicity readouts
S Liggi, G Drakakis, A Koutsoukas, I Cortes-Ciriano, P Martínez-Alonso, TE Malliavin, A Velazquez-Campoy, SC Brewerton, MJ Bodkin, DA Evans, RC Glen, JA Carrodeguas, A Bender
Future medicinal chemistry
(2014)
6
Proteochemometric modeling in a Bayesian framework.
I Cortes-Ciriano, GJ van Westen, EB Lenselink, DS Murrell, A Bender, T Malliavin
Journal of Cheminformatics
(2014)
6
Benchmarking of protein descriptor sets in proteochemometric modeling (part 1): Comparative study of 13 amino acid descriptor sets
GJ van Westen, RF Swier, I Cortes-Ciriano, JK Wegner, JP Overington, AP Ijzerman, HW van Vlijmen, A Bender
J Cheminform
(2013)
5